NGS Data Analysis
Variant calling using GATK
Covers the end to end analysis of FASTQ files to extract short variants.
Differential Gene Expression analysis
Covers end to end analysis of RNA-seq data from The Cancer Genome Atlas (TCGA).
Single Cell RNA-seq analysis
Involves the basics and analysis of single-cell RNA seq data using R programming.
Drug Discovery
Quantitative Structure Activity Relationship (QSAR)
Prediction of the IC50 prediction using supervised machine learning methods.
Docking and MD simulation
Identification of lead molecules by docking against a desired target, and assessing the stability by Molecular Dynamics simulations.